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Genome-Wide SNP Discovery and Population Genomic Characterisation in Indian Major Carp Labeo catla (Hamilton, 1822) Through Low-Depth Whole-Genome Resequencing.

Animal genetics - 1 Oct 2026

Sahoo B, Nandanpawar P, Das P, Sahoo L, Murmu K, Rasal A, Sundaray J K

Abstract excerpt

Single nucleotide polymorphisms (SNPs) are key markers for population and conservation genetics in aquaculture species. Using low-depth whole-genome resequencing of 35 Labeo catla individuals from seven populations (three wild riverine, four hatchery), we generated the first genome-wide SNP catalogue for this Indian major carp. Filtering against the L. catla reference genome (GCA_012976165.1) yielded 2.05 million...

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Topics

Animals
Polymorphism, Single Nucleotide
Carps
Whole Genome Sequencing
Genetics, Population
India

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PMID: 42747123
DOI: 10.1002/age.70207
PMCID: PMC13580294

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