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Article

Heat-responsive ONSEN long terminal repeats integrate heat shock factor motifs, DNA methylation and natural sequence variation in Arabidopsis.

Biology open - 15 Sept 2026

Barbaruah Baibhav R, Airlangga Rahmadani P, Ito Hidetaka

Abstract excerpt

ONSEN is a heat-activated Ty1/copia retrotransposon in Arabidopsis thaliana controlled by heat shock factors (HSFs) and epigenetic silencing. Heat shock element (HSE)-like sequences in ONSEN long terminal repeats (LTRs) contribute to heat responsiveness, but relationships among sequence architecture, basal DNA methylation and natural variation remain unclear. We combined transcription-factor motif prediction,...

Read the complete abstract on PubMed

Topics

DNA Methylation
Arabidopsis
Terminal Repeat Sequences
Retroelements
Heat-Shock Response
Heat Shock Transcription Factors

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Gene Expression Regulation, Plant

Nucleotide Motifs

Genome, Plant

Genetic Variation

Computational Biology

Source

Open in PubMed Open full text

Identifiers

PMID: 42626856
DOI: 10.1242/bio.062799
PMCID: PMC13602373

Genes

GC

Provenance

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