Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

An entropy-based framework for genomic variability analysis: A South American case study of human papillomavirus.

PloS one - 1 Jan 2026

López Leal Alan, Valdés-Muñoz Elizabeth, Faundez-Acuña Jorge Y, Rojas-Pérez Víctor, D Afonseca Vivían, Silva-Aravena Fabián

Abstract excerpt

The genetic diversity of Human Papillomavirus (HPV) poses challenges for molecular detection and genotyping, particularly in regions with distinctive circulating variants such as South America. This study aimed to quantitatively characterize HPV genomic variability using Shannon entropy (H) and to establish a reproducible framework for systematic variability assessment. Positional entropy was calculated across...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Entropy
Share to Genome, Viral

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genomics

Share to Human Papillomavirus Viruses

Share to Papillomaviridae

Share to Papillomavirus Infections

Share to Phylogeny

Share to South America

Source

Open in PubMed Open full text

Identifiers

PMID: 42139276
DOI: 10.1371/journal.pone.0349447
PMCID: PMC13178852

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 8 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

An entropy-based framework for genomic variability analysis: A South American case study of human papillomavirus.PMID 42139276Read ↗

An entropy-based approach for the identification of phylogenetically informative genomic regions of Papillomavirus.Semantic proximity Read ↗

Identifying Conserved Regions in HIV-1 Proteins by Entropy Analysis of Sequence Variability.Semantic proximity Read ↗

Landscape of oncoviral genotype and co-infection via Human papilloma and Hepatitis B viral tumor in-situ profilingSemantic proximity Read ↗

Amino acid sequence diversity of the major human papillomavirus capsid protein: implications for current and next generation vaccines.Semantic proximity Read ↗

Profiling cytogenetic diversity with entropy-based karyotypic analysis.Semantic proximity Read ↗

K-Mer Analyses Reveal Different Evolutionary Histories of Alpha, Beta, and Gamma Papillomaviruses.Semantic proximity Read ↗

Next Generation Sequencing for the Analysis of Parvovirus B19 Genomic Diversity.Semantic proximity Read ↗

TTV Load Mirrors Local Immunity and Tracks HPV Positivity in the Anogenital Tract.Semantic proximity Read ↗

Gene Length Bias in Human Papillomavirus Integration Sites: A Statistical Analysis Using KNIMESemantic proximity Read ↗

An Entropy-Based Statistic for Genomewide Association StudiesSemantic proximity Read ↗

Prevaccination genomic diversity of human papillomavirus genotype 6 (HPV 6).Semantic proximity Read ↗

The genetic diversity of human papillomavirus types from the species Gammapapillomavirus 15: HPV135, HPV146, and HPV179.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.