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Article

Automated phenotyping of ophthalmologic diseases from routine medical records using small language models and the human phenotype ontology (HPO).

Scientific reports - 9 May 2026

Thai Binh Duong, Arens Sebastian, Reinhard Thomas, Böhringer Daniel

Abstract excerpt

Automated phenotyping in ophthalmology requires accurate standardization of clinical terms to facilitate interoperability and research. This study evaluates the suitability of the human phenotype ontology (HPO) for automated extraction of ophthalmic phenotypes from narrative documentation. We developed a locally operated AI pipeline combining text segmentation and negation detection based on a small language...

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Identifiers

PMID: 42103891
DOI: 10.1038/s41598-026-51512-z
PMCID: PMC13157479

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 8 Sept 2026.

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