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GenoTools: an open-source Python package for efficient genotype data quality control and analysis.

G3 (Bethesda, Md.) - 8 Jan 2025

Vitale Dan, Koretsky Mathew J, Kuznetsov Nicole, Hong Samantha, Martin Jessica, James Mikayla, Makarious Mary B, Leonard Hampton, Iwaki Hirotaka, Faghri Faraz, Blauwendraat Cornelis, Singleton Andrew B, Song Yeajin, Levine Kristin, Kumar-Sreelatha Ashwin Ashok, Fang Zih-Hua, Nalls Mike

Abstract excerpt

GenoTools, a Python package, streamlines population genetics research by integrating ancestry estimation, quality control, and genome-wide association studies capabilities into efficient pipelines. By tracking samples, variants, and quality-specific measures throughout fully customizable pipelines, users can easily manage genetics data for large and small studies. GenoTools' "Ancestry" module renders highly...

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PMID: 39566101
DOI: 10.1093/g3journal/jkae268
PMCID: PMC11708233

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