Article
Impact of genotype-calling methodologies on genome-wide association and genomic prediction in polyploids.
The plant genome - 1 Dec 2023
Njuguna Joyce N, Clark Lindsay V, Lipka Alexander E, Anzoua Kossonou G, Bagmet Larisa, Chebukin Pavel, Dwiyanti Maria S, Dzyubenko Elena, Dzyubenko Nicolay, Ghimire Bimal Kumar, Jin Xiaoli, Johnson Douglas A, Kjeldsen Jens Bonderup, Nagano Hironori, de Bem Oliveira Ivone, Peng Junhua, Petersen Karen Koefoed, Sabitov Andrey, Seong Eun Soo, Yamada Toshihiko, Yoo Ji Hye, Yu Chang Yeon, Zhao Hua, Munoz Patricio, Long Stephen P, Sacks Erik J
Abstract excerpt
Discovery and analysis of genetic variants underlying agriculturally important traits are key to molecular breeding of crops. Reduced representation approaches have provided cost-efficient genotyping using next-generation sequencing. However, accurate genotype calling from next-generation sequencing data is challenging, particularly in polyploid species due to their genome complexity. Recently developed Bayesian...
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