Article
Brain Registration and Evaluation for Zebrafish (BREEZE)-mapping: A pipeline for whole-brain structural and activity analyses.
STAR protocols - 15 Dec 2023
Jin David S, Neelakantan Uma, Lacadie Cheryl M, Chen Tianying, Rooney Brendan, Liu Yunqing, Wu Weimiao, Wang Zuoheng, Papademetris Xenophon, Hoffman Ellen J
Abstract excerpt
Here, we present Brain Registration and Evaluation for Zebrafish (BREEZE)-mapping, a user-friendly pipeline for the registration and analysis of whole-brain images in larval zebrafish. We describe steps for pre-processing, registration, quantification, and visualization of whole-brain phenotypes in zebrafish mutants of genes associated with neurodevelopmental and neuropsychiatric disorders. By utilizing BioImage...
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