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Article

sitePath: a visual tool to identify polymorphism clades and help find fixed and parallel mutations.

BMC bioinformatics - 24 Nov 2022

Ji Chengyang, Han Na, Cheng Yexiao, Shang Jingzhe, Weng Shenghui, Yang Rong, Zhou Hang-Yu, Wu Aiping

Abstract excerpt

BACKGROUND: Identifying polymorphism clades on phylogenetic trees could help detect punctual mutations that are associated with viral functions. With visualization tools coloring the tree, it is easy to visually find clades where most sequences have the same polymorphism state. However, with the fast accumulation of viral sequences, a computational tool to automate this process is urgently needed. RESULTS: Here,...

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Share to Influenza A Virus, H3N2 Subtype
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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Source

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Identifiers

PMID: 36434502
DOI: 10.1186/s12859-022-05064-4
PMCID: PMC9701067

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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