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Article

Clarification of relationship between single-nucleotide polymorphism panels of Shiga toxin-producing Escherichia coli O157:H7/H- strains.

The Journal of veterinary medical science - 1 Oct 2022

Hirai Shinichiro, Yokoyama Eiji, Shiwa Yuh, Ishige Taichiro, Ando Naoshi, Shimizu Takeshi, Murakami Satoshi

Abstract excerpt

Eighty strains of enterohemorrhagic Escherichia coli O157:H7/H- were analyzed by three single-nucleotide polymorphism (SNP) panels using whole-genome sequencing data. The partial concordance of SNP types among the different SNP panels was observed on minimum spanning trees reconstructed with SNP data. As for lineage I/II strains, some of the clade 7 strains belonged to one unique SNP type as determined by three...

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PMID: 35989264
DOI: 10.1292/jvms.22-0242
PMCID: PMC9586023

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