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Population genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban landscape

14 Mar 2022

Abstract excerpt

Quantitative evidence for the risk of zoonoses and the spread of antimicrobial resistance remains lacking. Here, as part of the UrbanZoo project, we sampled Escherichia coli from humans, livestock and peri-domestic wildlife in 99 households across Nairobi, Kenya, to investigate its distribution among host species in this rapidly developing urban landscape. We performed whole-genome sequencing of 1,338 E. coli...

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PMID: 35288654
DOI: 10.1038/s41564-022-01079-y

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