Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

SweepCluster: A SNP clustering tool for detecting gene-specific sweeps in prokaryotes.

BMC bioinformatics - 6 Jan 2022

Qiu Junhui, Zhou Qi, Ye Weicai, Chen Qianjun, Bao Yun-Juan

Abstract excerpt

BACKGROUND: The gene-specific sweep is a selection process where an advantageous mutation along with the nearby neutral sites in a gene region increases the frequency in the population. It has been demonstrated to play important roles in ecological differentiation or phenotypic divergence in microbial populations. Therefore, identifying gene-specific sweeps in microorganisms will not only provide insights into...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Cluster Analysis
Share to Genetics, Population
Share to Genotype

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Linkage Disequilibrium

Share to Models, Genetic

Share to Polymorphism, Genetic

Share to Selection, Genetic

Source

Open in PubMed Open full text

Identifiers

PMID: 34991447
DOI: 10.1186/s12859-021-04533-6
PMCID: PMC8734265

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

SweepCluster: A SNP clustering tool for detecting gene-specific sweeps in prokaryotes.PMID 34991447Read ↗

SweepCluster: A SNP clustering tool for detecting gene-specific sweeps in prokaryotesSemantic proximity Read ↗

SweeD: likelihood-based detection of selective sweeps in thousands of genomes.Semantic proximity Read ↗

Phenotypic differentiation of Streptococcus pyogenes populations is induced by recombination-driven gene-specific sweeps.Semantic proximity Read ↗

OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets.Semantic proximity Read ↗

Versatile detection of diverse selective sweeps with Flex-sweepSemantic proximity Read ↗

A likelihood approach for uncovering selective sweep signatures from haplotype dataSemantic proximity Read ↗

Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations.Semantic proximity Read ↗

Identifying and classifying shared selective sweeps from multilocus dataSemantic proximity Read ↗

CLUES2 Companion: Computational pipelines to estimate, visualize, and date selection on multi-locus sitesSemantic proximity Read ↗

WINDEX: A hierarchical integration of site- and window-based statistics for characterizing the footprint of positive selection in genome-wide population genetic dataSemantic proximity Read ↗

Predicting Carriers of Ongoing Selective Sweeps Without Knowledge of the Favored AlleleSemantic proximity Read ↗

diploS/HIC: An Updated Approach to Classifying Selective Sweeps.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.