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Article

Centre-specific bacterial pathogen typing affects infection-control decision making.

Microbial genomics - 1 Aug 2021

Coolen Jordy P M, Jamin Casper, Savelkoul Paul H M, Rossen John W A, Wertheim Heiman F L, Matamoros Sébastien P, van Alphen Lieke B, On Behalf Of Sig Bioinformatics In Medical Microbiology Nl Consortium

Abstract excerpt

Whole-genome sequencing is becoming the de facto standard for bacterial outbreak surveillance and infection prevention. This is accompanied by a variety of bioinformatic tools and needs bioinformatics expertise for implementation. However, little is known about the concordance of reported outbreaks when using different bioinformatic workflows. In this multi-centre proficiency testing among 13 major Dutch...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 34356004
DOI: 10.1099/mgen.0.000612
PMCID: PMC8549354

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