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Concordance rate in cattle and sheep between genotypes differing in Illumina GenCall quality score.

Animal genetics - 1 Apr 2021

Berry D P, Dunne F L, Evans R D, McDermott K, O'Brien A C

Abstract excerpt

Proper quality control of data prior to downstream analyses is fundamental to ensure integrity of results; quality control of genomic data is no exception. While many metrics of quality control of genomic data exist, the objective of the present study was to quantify the genotype and allele concordance rate between called single nucleotide polymorphism (SNP) genotypes differing in GenCall (GC) score; the GC score...

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PMID: 33527466
DOI: 10.1111/age.13043

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