Comparison of conventional molecular and whole-genome sequencing methods for subtyping Salmonella enterica serovar Enteritidis strains from Tunisia.

doi:10.1007/s10096-020-04055-8

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Comparison of conventional molecular and whole-genome sequencing methods for subtyping Salmonella enterica serovar Enteritidis strains from Tunisia.

European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology - 1 Mar 2021

Ksibi Boutheina, Ktari Sonia, Othman Houcemeddine, Ghedira Kais, Maalej Sonda, Mnif Basma, Abbassi Mohamed Salah, Fabre Laetitia, Rhimi Faouzia, Le Hello Simon, Hammami Adnene

Abstract excerpt

We sought to determine the relative value of conventional molecular methods and whole-genome sequencing (WGS) for subtyping Salmonella enterica serovar Enteritidis recovered from 2000 to 2015 in Tunisia and to investigate the genetic diversity of this serotype. A total of 175 Salmonella Enteritidis isolates were recovered from human, animal, and foodborne outbreak samples. Pulsed-field gel electrophoresis (PFGE),...

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PMID: 33030625
DOI: 10.1007/s10096-020-04055-8

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