Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic

17 Aug 2020

Abstract excerpt

The COVID-19 pandemic has spread very fast around the world. A few days after the first detected case in South Africa, an infection started in a large hospital outbreak in Durban, KwaZulu-Natal (KZN). Phylogenetic analysis of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genomes can be used to trace the path of transmission within a hospital. It can also identify the source of the outbreak and...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Bacteriophages and microbial interactions
Share to SARS-CoV-2 and COVID-19 Research
Share to vaccines and immunoinformatics approaches

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Source

Identifiers

PMID: 32824573
DOI: 10.3390/genes11080949

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 9 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a PandemicPMID 32824573Read ↗

Tracking the emergence of new SARS-CoV-2 variants in South AfricaSemantic proximity Read ↗

Sequencing SARS-CoV-2 in a malaria research laboratory in Mali, West Africa: the road to sequencing the first SARS-CoV-2 genome in MaliSemantic proximity Read ↗

SARS-CoV-2 whole-genome sequencing using reverse complement PCR: For easy, fast and accurate outbreak and variant analysis.Semantic proximity Read ↗

A genomics network established to respond rapidly to public health threats in South AfricaSemantic proximity Read ↗

Development and validation of a high throughput SARS-CoV-2 whole genome sequencing workflow in a clinical laboratory.Semantic proximity Read ↗

Rapid, high-throughput, cost-effective whole-genome sequencing of SARS-CoV-2 using a condensed library preparation of the Illumina DNA Prep kitSemantic proximity Read ↗

Performance of Targeted Library Preparation Solutions for SARS-CoV-2 Whole Genome AnalysisSemantic proximity Read ↗

Rapid, High-Throughput, Cost Effective Whole Genome Sequencing of SARS-CoV-2 Using a Condensed One Hour Library Preparation of the Illumina DNA Prep KitSemantic proximity Read ↗

A benchmarking study of SARS-CoV-2 whole-genome sequencing protocols using COVID-19 patient samplesSemantic proximity Read ↗

The Impact of Real-Time Whole-Genome Sequencing in Controlling Healthcare-Associated SARS-CoV-2 OutbreaksSemantic proximity Read ↗

A benchmarking study of SARS-CoV-2 whole-genome sequencing protocols using COVID-19 patient samplesSemantic proximity Read ↗

Development and Validation of a High-Throughput Next-Generation Sequencing Workflow for SARS-CoV-2 Whole Genome Sequencing: Results from Over 65,000 Clinical CasesSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.