Article
Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus.
Nature communications - 21 Jan 2020
Zou Cheng, Karn Avinash, Reisch Bruce, Nguyen Allen, Sun Yongming, Bao Yun, Campbell Michael S, Church Deanna, Williams Stephen, Xu Xia, Ledbetter Craig A, Patel Sagar, Fennell Anne, Glaubitz Jeffrey C, Clark Matthew, Ware Doreen, Londo Jason P, Sun Qi, Cadle-Davidson Lance
Abstract excerpt
Transferable DNA markers are essential for breeding and genetics. Grapevine (Vitis) breeders utilize disease resistance alleles from congeneric species ~20 million years divergent, but existing Vitis marker platforms have cross-species transfer rates as low as 2%. Here, we apply a marker strategy targeting the inferred Vitis core genome. Incorporating seven linked-read de novo assemblies and three existing...
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