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A generic workflow for Single Locus Sequence Typing (SLST) design and subspecies characterization of microbiota

27 Dec 2019

Abstract excerpt

We present TaxPhlAn, a new method and bioinformatics pipeline for design and analysis of single-locus sequence typing (SLST) markers to type and profile bacteria beyond the species-level in a complex microbial community background. TaxPhlAn can be applied to any group of phylogenetically-related bacteria, provided reference genomes are available. As TaxPhlAn requires the SLST targets identified to fit the...

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PMID: 31882601
DOI: 10.1038/s41598-019-56065-y

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