Article
deltaRpkm: an R package for a rapid detection of differential gene presence between related bacterial genomes.
BMC bioinformatics - 2 Dec 2019
Akarsu Hatice, Aguilar-Bultet Lisandra, Falquet Laurent
Abstract excerpt
BACKGROUND: Comparative genomics has seen the development of many software performing the clustering, polymorphism and gene content analysis of genomes at different phylogenetic levels (isolates, species). These tools rely on de novo assembly and/or multiple alignments that can be computationally intensive for large datasets. With a large number of similar genomes in particular, e.g., in surveillance and outbreak...
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