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proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes.

Nucleic acids research - 8 Jan 2020

Mende Daniel R, Letunic Ivica, Maistrenko Oleksandr M, Schmidt Thomas S B, Milanese Alessio, Paoli Lucas, Hernández-Plaza Ana, Orakov Askarbek N, Forslund Sofia K, Sunagawa Shinichi, Zeller Georg, Huerta-Cepas Jaime, Coelho Luis Pedro, Bork Peer

Abstract excerpt

Microbiology depends on the availability of annotated microbial genomes for many applications. Comparative genomics approaches have been a major advance, but consistent and accurate annotations of genomes can be hard to obtain. In addition, newer concepts such as the pan-genome concept are still being implemented to help answer biological questions. Hence, we present proGenomes2, which provides 87 920...

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Identifiers

PMID: 31647096
DOI: 10.1093/nar/gkz1002
PMCID: PMC7145564

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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