Article
UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study.
BMC plant biology - 15 Jun 2018
Qi Peng, Gimode Davis, Saha Dipnarayan, Schröder Stephan, Chakraborty Debkanta, Wang Xuewen, Dida Mathews M, Malmberg Russell L, Devos Katrien M
Abstract excerpt
BACKGROUND: Research on orphan crops is often hindered by a lack of genomic resources. With the advent of affordable sequencing technologies, genotyping an entire genome or, for large-genome species, a representative fraction of the genome has become feasible for any crop. Nevertheless, most genotyping-by-sequencing (GBS) methods are geared towards obtaining large numbers of markers at low sequence depth, which...
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