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SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean.

G3 (Bethesda, Md.) - 28 Aug 2015

Song Qijian, Jia Gaofeng, Hyten David L, Jenkins Jerry, Hwang Eun-Young, Schroeder Steven G, Osorno Juan M, Schmutz Jeremy, Jackson Scott A, McClean Phillip E, Cregan Perry B

Abstract excerpt

A total of 992,682 single-nucleotide polymorphisms (SNPs) was identified as ideal for Illumina Infinium II BeadChip design after sequencing a diverse set of 17 common bean (Phaseolus vulgaris L) varieties with the aid of next-generation sequencing technology. From these, two BeadChips each with >5000 SNPs were designed. The BARCBean6K_1 BeadChip was selected for the purpose of optimizing polymorphism among market...

Topics

Chromosome Mapping
Genetic Linkage
Genome, Plant
Polymorphism, Single Nucleotide
Glycine max

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Identifiers

PMID: 26318155
DOI: 10.1534/g3.115.020594
PMCID: PMC4632048

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