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Article

Haplotype-based genotyping-by-sequencing in oat genome research.

Plant biotechnology journal - 1 Aug 2018

Bekele Wubishet A, Wight Charlene P, Chao Shiaoman, Howarth Catherine J, Tinker Nicholas A

Abstract excerpt

In a de novo genotyping-by-sequencing (GBS) analysis of short, 64-base tag-level haplotypes in 4657 accessions of cultivated oat, we discovered 164741 tag-level (TL) genetic variants containing 241224 SNPs. From this, the marker density of an oat consensus map was increased by the addition of more than 70000 loci. The mapped TL genotypes of a 635-line diversity panel were used to infer chromosome-level (CL)...

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PMID: 29345800
DOI: 10.1111/pbi.12888
PMCID: PMC6041447

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