Article
Canary: an atomic pipeline for clinical amplicon assays.
BMC bioinformatics - 15 Dec 2017
Doig Kenneth D, Ellul Jason, Fellowes Andrew, Thompson Ella R, Ryland Georgina, Blombery Piers, Papenfuss Anthony T, Fox Stephen B
Abstract excerpt
BACKGROUND: High throughput sequencing requires bioinformatics pipelines to process large volumes of data into meaningful variants that can be translated into a clinical report. These pipelines often suffer from a number of shortcomings: they lack robustness and have many components written in multiple languages, each with a variety of resource requirements. Pipeline components must be linked together with a...
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