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Single nucleotide variants and InDels identified from whole-genome re-sequencing of Guzerat, Gyr, Girolando and Holstein cattle breeds.

PloS one - 1 Jan 2017

Stafuzza Nedenia Bonvino, Zerlotini Adhemar, Lobo Francisco Pereira, Yamagishi Michel Eduardo Beleza, Chud Tatiane Cristina Seleguim, Caetano Alexandre Rodrigues, Munari Danísio Prado, Garrick Dorian J, Machado Marco Antonio, Martins Marta Fonseca, Carvalho Maria Raquel, Cole John Bruce, Barbosa da Silva Marcos Vinicius Gualberto

Abstract excerpt

Whole-genome re-sequencing, alignment and annotation analyses were undertaken for 12 sires representing four important cattle breeds in Brazil: Guzerat (multi-purpose), Gyr, Girolando and Holstein (dairy production). A total of approximately 4.3 billion reads from an Illumina HiSeq 2000 sequencer generated for each animal 10.7 to 16.4-fold genome coverage. A total of 27,441,279 single nucleotide variations (SNVs)...

Topics

Animals
Brazil
Breeding
Cattle
Female
Genotype
High-Throughput Nucleotide Sequencing
INDEL Mutation
Male

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Molecular Sequence Annotation

Oligonucleotide Array Sequence Analysis

Polymorphism, Single Nucleotide

Sequence Analysis, DNA

Species Specificity

Source

Open in PubMed Open full text

Identifiers

PMID: 28323836
DOI: 10.1371/journal.pone.0173954
PMCID: PMC5360315

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 31 Aug 2026.

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