Article
A method to customize population-specific arrays for genome-wide association testing.
European journal of human genetics : EJHG - 1 Feb 2017
Ehli Erik A, Abdellaoui Abdel, Fedko Iryna O, Grieser Charlie, Nohzadeh-Malakshah Sahar, Willemsen Gonneke, de Geus Eco Jc, Boomsma Dorret I, Davies Gareth E, Hottenga Jouke J
Abstract excerpt
As an example of optimizing population-specific genotyping assays using a whole-genome sequence reference set, we detail the approach that followed to design the Axiom-NL array which is characterized by an improved imputation backbone based on the Genome of the Netherlands (GoNL) reference sequence and, compared with earlier arrays, a more comprehensive inclusion of SNPs on chromosomes X, Y, and the mitochondria....
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