Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

TheSNPpit-A High Performance Database System for Managing Large Scale SNP Data.

PloS one - 1 Jan 2016

Groeneveld Eildert, Lichtenberg Helmut

Abstract excerpt

The fast development of high throughput genotyping has opened up new possibilities in genetics while at the same time producing considerable data handling issues. TheSNPpit is a database system for managing large amounts of multi panel SNP genotype data from any genotyping platform. With an increasing rate of genotyping in areas like animal and plant breeding as well as human genetics, already now hundreds of...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Computational Biology
Share to Data Mining
Share to Plants

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Polymorphism, Single Nucleotide

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 27780248
DOI: 10.1371/journal.pone.0164043
PMCID: PMC5079601

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

TheSNPpit-A High Performance Database System for Managing Large Scale SNP Data.PMID 27780248Read ↗

SNPFile--a software library and file format for large scale association mapping and population genetics studies.Semantic proximity Read ↗

snpR: User friendly population genomics for SNP data sets with categorical metadata.Semantic proximity Read ↗

Managing High-Density Genotyping Data with Gigwa.Semantic proximity Read ↗

fcGENE: a versatile tool for processing and transforming SNP datasets.Semantic proximity Read ↗

SNPLims: a data management system for genome wide association studies.Semantic proximity Read ↗

An integrated SNP mining and utilization (ISMU) pipeline for next generation sequencing data.Semantic proximity Read ↗

Managing large SNP datasets with SNPpy.Semantic proximity Read ↗

SNPchiMp: a database to disentangle the SNPchip jungle in bovine livestock.Semantic proximity Read ↗

SNPpy--database management for SNP data from genome wide association studies.Semantic proximity Read ↗

SNPper: retrieval and analysis of human SNPs.Semantic proximity Read ↗

Genome-wide association studies pipeline (GWASpi): a desktop application for genome-wide SNP analysis and management.Semantic proximity Read ↗

SNP-PHAGE--High throughput SNP discovery pipeline.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.