Article
SNPpy--database management for SNP data from genome wide association studies.
PloS one - 1 Jan 2011
Mitha Faheem, Herodotou Herodotos, Borisov Nedyalko, Jiang Chen, Yoder Josh, Owzar Kouros
Abstract excerpt
BACKGROUND: We describe SNPpy, a hybrid script database system using the Python SQLAlchemy library coupled with the PostgreSQL database to manage genotype data from Genome-Wide Association Studies (GWAS). This system makes it possible to merge study data with HapMap data and merge across studies for meta-analyses, including data filtering based on the values of phenotype and Single-Nucleotide Polymorphism (SNP)...
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