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SNPchiMp: a database to disentangle the SNPchip jungle in bovine livestock.

BMC genomics - 11 Feb 2014

Nicolazzi Ezequiel Luis, Picciolini Matteo, Strozzi Francesco, Schnabel Robert David, Lawley Cindy, Pirani Ali, Brew Fiona, Stella Alessandra

Abstract excerpt

BACKGROUND: Currently, six commercial whole-genome SNP chips are available for cattle genotyping, produced by two different genotyping platforms. Technical issues need to be addressed to combine data that originates from the different platforms, or different versions of the same array generated by the manufacturer. For example: i) genome coordinates for SNPs may refer to different genome assemblies; ii) reference...

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PMID: 24517501
DOI: 10.1186/1471-2164-15-123
PMCID: PMC3923093

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