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Article

PhenomeScape: a cytoscape app to identify differentially regulated sub-networks using known disease associations.

Bioinformatics (Oxford, England) - 15 Dec 2016

Soul Jamie, Dunn Sara L, Hardingham Tim E, Boot-Handford Ray P, Schwartz Jean-Marc

Abstract excerpt

PhenomeScape is a Cytoscape app which provides easy access to the PhenomeExpress algorithm to interpret gene expression data. PhenomeExpress integrates protein interaction networks with known phenotype to gene associations to find active sub-networks enriched in differentially expressed genes. It also incorporates cross-species phenotypes and associations to include results from animal models of disease. With...

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Identifiers

PMID: 27559157
DOI: 10.1093/bioinformatics/btw545
PMCID: PMC5167065

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

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