Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

SNP Discovery Using Next Generation Transcriptomic Sequencing.

Methods in molecular biology (Clifton, N.J.) - 1 Jan 2016

De Wit Pierre

Abstract excerpt

In this chapter, I will guide the user through methods to find new SNP markers from expressed sequence (RNA-Seq) data, focusing on the sample preparation and also on the bioinformatic analyses needed to sort through the immense flood of data from high-throughput sequencing machines. The general steps included are as follows: sample preparation, sequencing, quality control of data, assembly, mapping, SNP...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Computational Biology
Share to High-Throughput Nucleotide Sequencing
Share to Metagenomics

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Polymorphism, Single Nucleotide

Share to Sequence Analysis, RNA

Share to Software

Share to Transcriptome

Source

Identifiers

PMID: 27460371
DOI: 10.1007/978-1-4939-3774-5_5

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

SNP Discovery Using Next Generation Transcriptomic Sequencing.PMID 27460371Read ↗

SNP discovery in non-model organisms using 454 next generation sequencing.Semantic proximity Read ↗

SNP genotyping and population genomics from expressed sequences - current advances and future possibilities.Semantic proximity Read ↗

Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data.Semantic proximity Read ↗

SNP discovery using Next Generation Transcriptomic Sequencing in Atlantic herring (Clupea harengus).Semantic proximity Read ↗

Genomics: Seeing more SNPs.Semantic proximity Read ↗

A beginners guide to SNP calling from high-throughput DNA-sequencing data.Semantic proximity Read ↗

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor.Semantic proximity Read ↗

Development of strategies for SNP detection in RNA-seq data: application to lymphoblastoid cell lines and evaluation using 1000 Genomes data.Semantic proximity Read ↗

Reliable identification of genomic variants from RNA-seq data.Semantic proximity Read ↗

SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system.Semantic proximity Read ↗

In-depth annotation of SNPs arising from resequencing projects using NGS-SNP.Semantic proximity Read ↗

An integrated SNP mining and utilization (ISMU) pipeline for next generation sequencing data.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.