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AMAP: A pipeline for whole-genome mutation detection in Arabidopsis thaliana.

Genes & genetic systems - 17 Mar 2017

Ishii Kotaro, Kazama Yusuke, Hirano Tomonari, Hamada Michiaki, Ono Yukiteru, Yamada Mieko, Abe Tomoko

Abstract excerpt

Detection of mutations at the whole-genome level is now possible by the use of high-throughput sequencing. However, determining mutations is a time-consuming process due to the number of false positives provided by mutation-detecting programs. AMAP (automated mutation analysis pipeline) was developed to overcome this issue. AMAP integrates a set of well-validated programs for mapping (BWA), removal of potential...

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PMID: 27452041
DOI: 10.1266/ggs.15-00078

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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