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Article

Methods for accurate quantification of LTR-retrotransposon copy number using short-read sequence data: a case study in Sorghum.

Molecular genetics and genomics : MGG - 1 Oct 2016

Ramachandran Dhanushya, Hawkins Jennifer S

Abstract excerpt

Transposable elements (TEs) are ubiquitous in eukaryotic genomes and their mobility impacts genome structure and function in myriad ways. Because of their abundance, activity, and repetitive nature, the characterization and analysis of TEs remain challenging, particularly from short-read sequencing projects. To overcome this difficulty, we have developed a method that estimates TE copy number from short-read...

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PMID: 27295958
DOI: 10.1007/s00438-016-1225-9

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

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