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Indica rice genome assembly, annotation and mining of blast disease resistance genes.

BMC genomics - 16 Mar 2016

Mahesh H B, Shirke Meghana Deepak, Singh Siddarth, Rajamani Anantharamanan, Hittalmani Shailaja, Wang Guo-Liang, Gowda Malali

Abstract excerpt

BACKGROUND: Rice is a major staple food crop in the world. Over 80% of rice cultivation area is under indica rice. Currently, genomic resources are lacking for indica as compared to japonica rice. In this study, we generated deep-sequencing data (Illumina and Pacific Biosciences sequencing) for one of the indica rice cultivars, HR-12 from India. RESULTS: We assembled over 86% (389 Mb) of rice genome and annotated...

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PMID: 26984283
DOI: 10.1186/s12864-016-2523-7
PMCID: PMC4793524

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