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Population structure of Atlantic mackerel inferred from RAD-seq-derived SNP markers: effects of sequence clustering parameters and hierarchical SNP selection.

Molecular ecology resources - 1 Jul 2016

Rodríguez-Ezpeleta Naiara, Bradbury Ian R, Mendibil Iñaki, Álvarez Paula, Cotano Unai, Irigoien Xabier

Abstract excerpt

Restriction-site-associated DNA sequencing (RAD-seq) and related methods are revolutionizing the field of population genomics in nonmodel organisms as they allow generating an unprecedented number of single nucleotide polymorphisms (SNPs) even when no genomic information is available. Yet, RAD-seq data analyses rely on assumptions on nature and number of nucleotide variants present in a single locus, the choice...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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PMID: 26936210
DOI: 10.1111/1755-0998.12518

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