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Article

EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.

Database : the journal of biological databases and curation - 1 Jan 2016

Pafilis Evangelos, Buttigieg Pier Luigi, Ferrell Barbra, Pereira Emiliano, Schnetzer Julia, Arvanitidis Christos, Jensen Lars Juhl

Abstract excerpt

The microbial and molecular ecology research communities have made substantial progress on developing standards for annotating samples with environment metadata. However, sample manual annotation is a highly labor intensive process and requires familiarity with the terminologies used. We have therefore developed an interactive annotation tool, EXTRACT, which helps curators identify and extract standard-compliant...

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PMID: 26896844
DOI: 10.1093/database/baw005
PMCID: PMC4761108

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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