Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Development and application of a set of breeder-friendly SNP markers for genetic analyses and molecular breeding of rice (Oryza sativa L.).

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik - 1 Oct 2011

Chen Haodong, He Hang, Zou Yanjiao, Chen Wei, Yu Renbo, Liu Xia, Yang Yang, Gao Yong-Ming, Xu Jian-Long, Fan Liu-Min, Li Yi, Li Zhi-Kang, Deng Xing Wang

Abstract excerpt

Single nucleotide polymorphisms (SNPs) are the most abundant DNA markers in plant genomes. In this study, based on 54,465 SNPs between the genomes of two Indica varieties, Minghui 63 (MH63) and Zhenshan 97 (ZS97) and additional 20,705 SNPs between the MH63 and Nipponbare genomes, we identified and confirmed 1,633 well-distributed SNPs by PCR and Sanger sequencing. From these, a set of 372 SNPs were further...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Chromosomes, Plant
Share to Crosses, Genetic

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to DNA, Plant

Share to DNA Shuffling

Share to Genetic Markers

Share to Genome, Plant

Share to Sequence Analysis, DNA

Source

Identifiers

PMID: 21681488
DOI: 10.1007/s00122-011-1633-5

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Development and application of a set of breeder-friendly SNP markers for genetic analyses and molecular breeding of rice (Oryza sativa L.).PMID 21681488Read ↗

The genetic diversity and structure of indica rice in China as detected by single nucleotide polymorphism analysis.Semantic proximity Read ↗

Genetic diversity and population structure of 93 rice cultivars (lines) (Oryza sativa Xian group) in Qinba in China by 3 types of genetic markers.Semantic proximity Read ↗

Discovery of genome-wide DNA polymorphisms in a landrace cultivar of Japonica rice by whole-genome sequencing.Semantic proximity Read ↗

Development and application of indica–japonica SNP assays using the Fluidigm platform for rice genetic analysis and molecular breedingSemantic proximity Read ↗

A strategy for genome-wide identification of gene based polymorphisms in rice reveals non-synonymous variation and functional genotypic markers.Semantic proximity Read ↗

Haplotype-based allele mining in the Japan-MAGIC rice population.Semantic proximity Read ↗

Search for and analysis of single nucleotide polymorphisms (SNPs) in rice (Oryza sativa, Oryza rufipogon) and establishment of SNP markers.Semantic proximity Read ↗

RiceVarMap: a comprehensive database of rice genomic variations.Semantic proximity Read ↗

Genome-wide DNA polymorphisms in elite indica rice inbreds discovered by whole-genome sequencing.Semantic proximity Read ↗

SNP-Seek database of SNPs derived from 3000 rice genomes.Semantic proximity Read ↗

Molecular and genetic dissection of the USDA rice mini-core collection using high-density SNP markers.Semantic proximity Read ↗

Development of genomics-based genotyping platforms and their applications in rice breeding.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.