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Article

regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests.

Bioinformatics (Oxford, England) - 15 Jan 2016

Gel Bernat, Díez-Villanueva Anna, Serra Eduard, Buschbeck Marcus, Peinado Miguel A, Malinverni Roberto

Abstract excerpt

MOTIVATION: Statistically assessing the relation between a set of genomic regions and other genomic features is a common challenging task in genomic and epigenomic analyses. Randomization based approaches implicitly take into account the complexity of the genome without the need of assuming an underlying statistical model. SUMMARY: regioneR is an R package that implements a permutation test framework specifically...

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PMID: 26424858
DOI: 10.1093/bioinformatics/btv562
PMCID: PMC4708104

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