Article
Genome-wide insertion-deletion (InDel) marker discovery and genotyping for genomics-assisted breeding applications in chickpea.
DNA research : an international journal for rapid publication of reports on genes and genomes - 1 Oct 2015
Das Shouvik, Upadhyaya Hari D, Srivastava Rishi, Bajaj Deepak, Gowda C L L, Sharma Shivali, Singh Sube, Tyagi Akhilesh K, Parida Swarup K
Abstract excerpt
We developed 21,499 genome-wide insertion-deletion (InDel) markers (2- to 54-bp in silico fragment length polymorphism) by comparing the genomic sequences of four (desi, kabuli and wild C. reticulatum) chickpea [Cicer arietinum (L.)] accessions. InDel markers showing 2- to 6-bp fragment length polymorphism among accessions were abundant (76.8%) in the chickpea genome. The physically mapped 7,643 and 13,856...
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