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Article

MDN: A Web Portal for Network Analysis of Molecular Dynamics Simulations.

Biophysical journal - 15 Sept 2015

Ribeiro Andre A S T, Ortiz Vanessa

Abstract excerpt

We introduce a web portal that employs network theory for the analysis of trajectories from molecular dynamics simulations. Users can create protein energy networks following methodology previously introduced by our group, and can identify residues that are important for signal propagation, as well as measure the efficiency of signal propagation by calculating the network coupling. This tool, called MDN, was used...

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Identifiers

PMID: 26143656
DOI: 10.1016/j.bpj.2015.06.013
PMCID: PMC4576149

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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