Article
A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea.
Scientific reports - 10 Jun 2015
Kujur Alice, Bajaj Deepak, Upadhyaya Hari D, Das Shouvik, Ranjan Rajeev, Shree Tanima, Saxena Maneesha S, Badoni Saurabh, Kumar Vinod, Tripathi Shailesh, Gowda C L L, Sharma Shivali, Singh Sube, Tyagi Akhilesh K, Parida Swarup K
Abstract excerpt
We identified 44844 high-quality SNPs by sequencing 92 diverse chickpea accessions belonging to a seed and pod trait-specific association panel using reference genome- and de novo-based GBS (genotyping-by-sequencing) assays. A GWAS (genome-wide association study) in an association panel of 211, including the 92 sequenced accessions, identified 22 major genomic loci showing significant association (explaining...
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