Article
SV-AUTOPILOT: optimized, automated construction of structural variation discovery and benchmarking pipelines.
BMC genomics - 25 Mar 2015
Leung Wai Yi, Marschall Tobias, Paudel Yogesh, Falquet Laurent, Mei Hailiang, Schönhuth Alexander, Maoz Moss Tiffanie Yael
Abstract excerpt
BACKGROUND: Many tools exist to predict structural variants (SVs), utilizing a variety of algorithms. However, they have largely been developed and tested on human germline or somatic (e.g. cancer) variation. It seems appropriate to exploit this wealth of technology available for humans also for other species. Objectives of this work included: a) Creating an automated, standardized pipeline for SV prediction. b)...
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