Article
Bayesian inference of local trees along chromosomes by the sequential Markov coalescent.
Journal of molecular evolution - 1 May 2014
Zheng Chaozhi, Kuhner Mary K, Thompson Elizabeth A
Abstract excerpt
We propose a genealogy-sampling algorithm, Sequential Markov Ancestral Recombination Tree (SMARTree), that provides an approach to estimation from SNP haplotype data of the patterns of coancestry across a genome segment among a set of homologous chromosomes. To enable analysis across longer segments of genome, the sequence of coalescent trees is modeled via the modified sequential Markov coalescent (Marjoram and...
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