Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

ReadXplorer--visualization and analysis of mapped sequences.

Bioinformatics (Oxford, England) - 15 Aug 2014

Hilker Rolf, Stadermann Kai Bernd, Doppmeier Daniel, Kalinowski Jörn, Stoye Jens, Straube Jasmin, Winnebald Jörn, Goesmann Alexander

Abstract excerpt

MOTIVATION: Fast algorithms and well-arranged visualizations are required for the comprehensive analysis of the ever-growing size of genomic and transcriptomic next-generation sequencing data. RESULTS: ReadXplorer is a software offering straightforward visualization and extensive analysis functions for genomic and transcriptomic DNA sequences mapped on a reference. A unique specialty of ReadXplorer is the quality...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Computer Graphics
Share to Genomics

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to High-Throughput Nucleotide Sequencing

Share to Operon

Share to Sequence Alignment

Share to Software

Share to Transcription Initiation Site

Source

Open in PubMed Open full text

Identifiers

PMID: 24790157
DOI: 10.1093/bioinformatics/btu205
PMCID: PMC4217279

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

ReadXplorer--visualization and analysis of mapped sequences.PMID 24790157Read ↗

Light-RCV: a lightweight read coverage viewer for next generation sequencing data.Semantic proximity Read ↗

MapView: visualization of short reads alignment on a desktop computer.Semantic proximity Read ↗

MagicViewer: integrated solution for next-generation sequencing data visualization and genetic variation detection and annotation.Semantic proximity Read ↗

igv-reports: embedding interactive genomic visualizations in HTML reports to aid variant review.Semantic proximity Read ↗

<i>ggDNAvis</i> : a <i>ggplot2</i> -based <i>R</i> package for creating high-quality DNA sequence and modification visualisationsSemantic proximity Read ↗

Visualization tools for human structural variations identified by whole-genome sequencing.Semantic proximity Read ↗

Rnalys: An Interactive Web Application for Transcriptomic Data Analysis and VisualizationSemantic proximity Read ↗

Savant: genome browser for high-throughput sequencing data.Semantic proximity Read ↗

VisVariant: A java program to visualise genetic variants in next-generation sequencing dataSemantic proximity Read ↗

<i>RIdeogram</i> : drawing SVG graphics to visualize and map genome-wide data on the idiogramsSemantic proximity Read ↗

CRAWview: for viewing splicing variation, gene families, and polymorphism in clusters of ESTs and full-length sequences.Semantic proximity Read ↗

Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.