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igv-reports: embedding interactive genomic visualizations in HTML reports to aid variant review.

Bioinformatics (Oxford, England) - 7 Apr 2026

Robinson James T, Thorvaldsdottir Helga, Mesirov Jill P

Abstract excerpt

SUMMARY: We present igv-reports, a command-line tool to create standalone HTML pages embedding interactive genomic visualizations of read alignments and associated annotations to support variant inspection workflows. The reports contain all data and code required for visualization of the variant sites, with no dependencies on the input data files. AVAILABILITY AND IMPLEMENTATION: igv-reports is a command-line...

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PMID: 41808454
DOI: 10.1093/bioinformatics/btag125
PMCID: PMC13070637

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