Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Large scale in-silico identification and characterization of simple sequence repeats (SSRs) from de novo assembled transcriptome of Catharanthus roseus (L.) G. Don.

Plant cell reports - 1 Jun 2014

Kumar Santosh, Shah Niraj, Garg Vanika, Bhatia Sabhyata

Abstract excerpt

Transcriptomic data of C. roseus offering ample sequence resources for providing better insights into gene diversity: large resource of genic SSR markers to accelerate genomic studies and breeding in Catharanthus . Next-generation sequencing is an efficient system for generating high-throughput complete transcripts/genes and developing molecular markers. We present here the transcriptome sequencing of a...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Databases, Genetic
Share to Expressed Sequence Tags

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Gene Library

Share to Gene Ontology

Share to Molecular Sequence Annotation

Share to Nucleotide Motifs

Share to Seedlings

Share to Sequence Analysis, RNA

Source

Identifiers

PMID: 24482265
DOI: 10.1007/s00299-014-1569-8

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Large scale in-silico identification and characterization of simple sequence repeats (SSRs) from de novo assembled transcriptome of Catharanthus roseus (L.) G. Don.PMID 24482265Read ↗

Transcriptome analysis of potential simple sequence repeat markers in Ammopiptanthus mongolicus.Semantic proximity Read ↗

Development of EST-SSR markers in flowering Chinese cabbage (Brassica campestris L. ssp. chinensis var. utilis Tsen et Lee) based on de novo transcriptomic assemblies.Semantic proximity Read ↗

De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity.Semantic proximity Read ↗

Transcriptome sequencing of wild chickpea as a rich resource for marker development.Semantic proximity Read ↗

Large-scale resource development in Gossypium hirsutum L. by 454 sequencing of genic-enriched libraries from six diverse genotypes.Semantic proximity Read ↗

Transcriptome characterization and screening of molecular markers in ecologically important Himalayan species (Rhododendron arboreum).Semantic proximity Read ↗

Sequencing, Characterization, and Comparative Analyses of the Plastome of Caragana rosea var. rosea.Semantic proximity Read ↗

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa.Semantic proximity Read ↗

Developing a new genic SSR primer database in faba bean (Vicia faba L.).Semantic proximity Read ↗

TeaMiD: a comprehensive database of simple sequence repeat markers of tea.Semantic proximity Read ↗

In silico search, characterization and validation of new EST-SSR markers in the genus Prunus.Semantic proximity Read ↗

RNA-Seq analysis for transcriptome assembly, gene identification, and SSR mining in ginkgo (Ginkgo biloba L.)Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.