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Development of EST-SSR markers in flowering Chinese cabbage (Brassica campestris L. ssp. chinensis var. utilis Tsen et Lee) based on de novo transcriptomic assemblies.

PloS one - 1 Jan 2017

Chen Jingfang, Li Ronghua, Xia Yanshi, Bai Guihua, Guo Peiguo, Wang Zhiliang, Zhang Hua, Siddique Kadambot H M

Abstract excerpt

Flowering Chinese cabbage is one of the most important vegetable crops in southern China. Genetic improvement of various agronomic traits in this crop is underway to meet high market demand in the region, but the progress is hampered by limited number of molecular markers available in this crop. This study aimed to develop EST-SSR markers from transcriptome sequences generated by next-generation sequencing....

Topics

Brassica
Breeding
Cluster Analysis
DNA, Plant
Expressed Sequence Tags
Genetic Engineering
Genetic Markers
Genotype
Sequence Analysis, DNA
Transcriptome

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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PMID: 28902884
DOI: 10.1371/journal.pone.0184736
PMCID: PMC5597223

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