Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Topics Community

Article

A resource of single-nucleotide polymorphisms for rainbow trout generated by restriction-site associated DNA sequencing of doubled haploids.

Molecular ecology resources - 1 May 2014

Palti Yniv, Gao Guangtu, Miller Michael R, Vallejo Roger L, Wheeler Paul A, Quillet Edwige, Yao Jianbo, Thorgaard Gary H, Salem Mohamed, Rexroad Caird E

Abstract excerpt

Salmonid genomes are considered to be in a pseudo-tetraploid state as a result of a genome duplication event that occurred between 25 and 100 Ma. This situation complicates single-nucleotide polymorphism (SNP) discovery in rainbow trout as many putative SNPs are actually paralogous sequence variants (PSVs) and not simple allelic variants. To differentiate PSVs from simple allelic variants, we used 19 homozygous...

Topics

Alleles
Animals
Base Sequence
Deoxyribonucleases, Type II Site-Specific
Genome
Genotype
Haploidy
Molecular Sequence Data
Oncorhynchus mykiss
Phylogeny

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Polymorphism, Single Nucleotide

Sequence Analysis, DNA

Source

Identifiers

PMID: 24251403
DOI: 10.1111/1755-0998.12204

Genes

MAF

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 31 Aug 2026.

Community interpretation

Discuss the evidence

Ask a question, add context or challenge an interpretation. Community activity is separate from scientific evidence strength.

0

discussions

0

replies

Citations encouraged

Claims remain attributable.

No discussion yet

Be the first to add a careful, cited interpretation.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

A resource of single-nucleotide polymorphisms for rainbow trout generated by restriction-site associated DNA sequencing of doubled haploids.PMID 24251403Read ↗

Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication.Semantic proximity Read ↗

Development and characterisation of an expressed sequence tags (EST)-derived single nucleotide polymorphisms (SNPs) resource in rainbow trout.Semantic proximity Read ↗

Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library.Semantic proximity Read ↗

Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon.Semantic proximity Read ↗

Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations.Semantic proximity Read ↗

The development and characterization of a 57K single nucleotide polymorphism array for rainbow trout.Semantic proximity Read ↗

Discovery and characterization of single-nucleotide polymorphisms in steelhead/rainbow trout, Oncorhynchus mykiss.Semantic proximity Read ↗

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar).Semantic proximity Read ↗

FishSNP: a high quality cross-species SNP database of fishes.Semantic proximity Read ↗

Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids.Semantic proximity Read ↗

Targeted SNP discovery in Atlantic salmon (Salmo salar) genes using a 3'UTR-primed SNP detection approach.Semantic proximity Read ↗

Genome-wide nucleotide diversity of hatchery-reared Atlantic and Mediterranean strains of brown trout Salmo trutta compared to wild Mediterranean populations.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.