Article
Detecting identity by descent and estimating genotype error rates in sequence data.
American journal of human genetics - 7 Nov 2013
Browning Brian L, Browning Sharon R
Abstract excerpt
Existing methods for identity by descent (IBD) segment detection were designed for SNP array data, not sequence data. Sequence data have a much higher density of genetic variants and a different allele frequency distribution, and can have higher genotype error rates. Consequently, best practices for IBD detection in SNP array data do not necessarily carry over to sequence data. We present a method, IBDseq, for...
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