Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Improved estimates of coordinate error for molecular replacement.

Acta crystallographica. Section D, Biological crystallography - 1 Nov 2013

Oeffner Robert D, Bunkóczi Gábor, McCoy Airlie J, Read Randy J

Abstract excerpt

The estimate of the root-mean-square deviation (r.m.s.d.) in coordinates between the model and the target is an essential parameter for calibrating likelihood functions for molecular replacement (MR). Good estimates of the r.m.s.d. lead to good estimates of the variance term in the likelihood fun...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Amino Acid Substitution
Share to Crystallography, X-Ray
Share to Databases, Protein

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Likelihood Functions

Share to Protein Folding

Share to Sequence Alignment

Share to Software

Share to X-Ray Diffraction

Source

Open in PubMed Open full text

Identifiers

PMID: 24189232
DOI: 10.1107/S0907444913023512
PMCID: PMC3817694

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 4 Sept 2026. Prepared record publication-24189232-2026-09-04.2. Manifest publication-graph-cohort-2026-09-04.2.

Source receipt: PubMed via Helena Literature Corpus, retrieved 4 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 8 closest

Improved estimates of coordinate error for molecular replacement.PMID 24189232Read ↗

Mining the protein data bank to differentiate error from structural variation in clustered static structures: an examination of HIV protease.Semantic proximity Read ↗

Crystallographic refinement by knowledge-based exploration of complex energy landscapes.Semantic proximity Read ↗

Automatic mutual information noise omission (AMINO): generating order parameters for molecular systemsSemantic proximity Read ↗

Repacking the Core of T4 lysozyme by automated design.Semantic proximity Read ↗

Meaningful refinement of polyalanine models using rigid-body simulated annealing: application to the structure determination of the A31P Rop mutant.Semantic proximity Read ↗

A Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and Design.Semantic proximity Read ↗

[Protein crystal structures for analysis of protein functions and drug design].Semantic proximity Read ↗

Accurate protein stability predictions from homology modelsSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.