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Article

ReviSTER: an automated pipeline to revise misaligned reads to simple tandem repeats.

Bioinformatics (Oxford, England) - 15 Jul 2013

Tae Hongseok, McMahon Kevin W, Settlage Robert E, Bavarva Jasmin H, Garner Harold R

Abstract excerpt

MOTIVATION: Simple tandem repeats are highly variable genetic elements and widespread in genomes of many organisms. Next-generation sequencing technologies have enabled a robust comparison of large numbers of simple tandem repeat loci; however, analysis of their variation using traditional sequence analysis approaches still remains limiting and problematic due to variants occurring in repeat sequences confusing...

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PMID: 23677944
DOI: 10.1093/bioinformatics/btt277
PMCID: PMC3702252

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